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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8960 and 8961 are separated by 334 nucleotides
8961 and 8962 are separated by 638 nucleotides
8962 and 8963 are separated by 520 nucleotides
8963 and 8964 are separated by 444 nucleotides
mRNA_592: 8960 - K10747 LIG1 DNA ligase 1, at 1,418,540 to 1,422,145
8960
mRNA_593: 8961 - K18469 TBC1D5 TBC1 domain family member 5, at 1,422,480 to 1,425,082
8961
mRNA_594: 8962 - K16261 YAT yeast amino acid transporter, at 1,425,721 to 1,428,613
8962
mRNA_595: 8963 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,429,134 to 1,431,703
8963
mRNA_596: 8964 - Hypothetical Protein, at 1,432,148 to 1,433,908
8964
Group
Condition
mRNA
_592
mRNA
_593
mRNA
_594
mRNA
_595
mRNA
_596
8960
8961
8962
8963
8964
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-1.1
-0.1
+0.1
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
+0.0
-1.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.7
+0.1
-2.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.6
-0.7
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
+0.0
-0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.7
-0.3
-1.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.8
-0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
+0.1
-0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
+0.6
+0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
+0.5
+0.1
-0.3
growth on oleic acid
YNB Glucose
+0.1
+0.5
-0.1
-0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.2
+0.5
+0.0
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.1
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.1
-0.1
-0.0
auxotrophy
Dropout Complete
+0.0
-0.0
-0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.2
-0.1
+0.2
auxotrophy
YNB Glucose
+0.1
+0.2
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.6
-0.2
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.2
-0.1
+0.7
growth on ypd
YPD
-0.2
+0.0
+0.4
-0.2
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
+0.1
+0.1
+0.2
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