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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8962 and 8963 are separated by 520 nucleotides
8963 and 8964 are separated by 444 nucleotides
8964 and 8965 are separated by 1408 nucleotides
8965 and 8966 are separated by 910 nucleotides
mRNA_594: 8962 - K16261 YAT yeast amino acid transporter, at 1,425,721 to 1,428,613
8962
mRNA_595: 8963 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,429,134 to 1,431,703
8963
mRNA_596: 8964 - Hypothetical Protein, at 1,432,148 to 1,433,908
8964
mRNA_597: 8965 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 1,435,317 to 1,436,977
8965
mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1,437,888 to 1,441,324
8966
Group
Condition
mRNA
_594
mRNA
_595
mRNA
_596
mRNA
_597
mRNA
_598
8962
8963
8964
8965
8966
growth on oleic acid
YNB Oleic Acid
+0.1
-2.1
-0.1
-0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
-1.0
-1.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.0
+0.0
-0.7
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-1.3
-0.3
+0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-1.3
+0.1
+0.8
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.5
-0.3
-0.1
+0.1
auxotrophy
Dropout Complete
-0.0
-0.1
+0.1
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.1
-0.7
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
+0.3
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.2
-0.6
+0.1
auxotrophy
YNB Glucose
-0.0
+0.1
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.0
-0.6
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.0
+0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
-0.3
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
-0.4
+1.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
-0.3
+0.7
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.7
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
-0.3
+0.9
+0.1
growth on ypd
YPD
+0.4
-0.2
+0.7
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.1
-0.6
+0.7
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.2
+0.9
+0.4
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