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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8963 and 8964 are separated by 444 nucleotides
8964 and 8965 are separated by 1408 nucleotides
8965 and 8966 are separated by 910 nucleotides
8966 and 8967 are separated by 133 nucleotides
mRNA_595: 8963 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,429,134 to 1,431,703
8963
mRNA_596: 8964 - Hypothetical Protein, at 1,432,148 to 1,433,908
8964
mRNA_597: 8965 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 1,435,317 to 1,436,977
8965
mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1,437,888 to 1,441,324
8966
mRNA_599: 8967 - HMMPfam-2'-5' RNA ligase superfamily-PF13563,SUPERFAMILY--SSF55144, at 1,441,458 to 1,442,153
8967
Group
Condition
mRNA
_595
mRNA
_596
mRNA
_597
mRNA
_598
mRNA
_599
8963
8964
8965
8966
8967
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.0
-1.3
+0.5
-0.6
growth on oleic acid
YNB Oleic Acid
-2.1
-0.1
-0.2
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
-0.5
-0.1
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
-0.3
+0.4
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.0
-0.7
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.4
+1.1
-0.0
-1.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.6
+0.2
-0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
+0.1
+0.8
-0.2
-0.3
growth on oleic acid
YNB Glucose
-0.5
-0.3
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
-0.1
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.6
+0.1
-0.4
auxotrophy
Dropout Complete
-0.1
+0.1
-0.6
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.7
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.7
-0.2
-0.1
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
+0.5
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.6
+0.7
-0.0
-0.3
growth on ypd
YPD
-0.2
+0.7
-0.3
+0.1
-0.4
auxotrophy
YNB Glucose
+0.1
+0.1
-0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.9
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.3
+0.7
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.9
+0.4
+0.7
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