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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8966 and 8967 are separated by 133 nucleotides
8967 and 8968 are separated by 1119 nucleotides
8968 and 8969 are separated by 428 nucleotides
8969 and 8970 are separated by 277 nucleotides
mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1,437,888 to 1,441,324
8966
mRNA_599: 8967 - HMMPfam-2'-5' RNA ligase superfamily-PF13563,SUPERFAMILY--SSF55144, at 1,441,458 to 1,442,153
8967
mRNA_600: 8968 - K17785 IMMT, FCJ1, MNOS2 mitofilin, at 1,443,273 to 1,445,582
8968
mRNA_601: 8969 - K01784 galE, GALE UDP-glucose 4-epimerase, at 1,446,011 to 1,447,734
8969
mRNA_602: 8970 - K14642 YND1 golgi apyrase, at 1,448,012 to 1,450,852
8970
Group
Condition
mRNA
_598
mRNA
_599
mRNA
_600
mRNA
_601
mRNA
_602
8966
8967
8968
8969
8970
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.5
-0.7
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.8
-0.6
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-1.4
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.3
-0.9
N.D.
+0.3
growth on ypd
YPD
+0.1
-0.4
-0.1
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.4
-0.7
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.5
+0.0
N.D.
-0.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
-0.7
N.D.
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.5
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.6
+0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
-1.4
N.D.
+1.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.4
-0.4
N.D.
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose
-0.1
+0.1
-0.7
N.D.
+0.6
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.5
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.7
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-1.6
N.D.
+1.9
auxotrophy
Dropout Complete
-0.1
+0.3
-0.3
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.7
-0.3
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.5
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
+0.2
N.D.
-0.2
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