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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8978 and 8979 are separated by 70 nucleotides
8979 and 8980 are separated by 109 nucleotides
8980 and 8981 are separated by 147 nucleotides
8981 and 8982 are separated by 360 nucleotides
mRNA_610: 8978 - K06961 KRR1 ribosomal RNA assembly protein, at 1,469,039 to 1,470,636
8978
mRNA_611: 8979 - K00490 CYP4F cytochrome P450, family 4, subfamily F, at 1,470,707 to 1,472,980
8979
mRNA_612: 8980 - KOG3183 Predicted Zn-finger protein, at 1,473,090 to 1,474,198
8980
mRNA_613: 8981 - K10631 TOPORS E3 ubiquitin-protein ligase Topors, at 1,474,346 to 1,477,518
8981
mRNA_614: 8982 - K06875 PDCD5, TFAR19 programmed cell death protein 5, at 1,477,879 to 1,478,544
8982
Group
Condition
mRNA
_610
mRNA
_611
mRNA
_612
mRNA
_613
mRNA
_614
8978
8979
8980
8981
8982
auxotrophy
Dropout Complete
N.D.
-1.3
-0.2
-1.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.5
-1.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.1
-0.9
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.1
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
-0.4
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.2
-0.8
N.D.
auxotrophy
YNB Glucose
N.D.
-0.1
-0.1
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
+0.1
-0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
+0.2
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.5
-0.9
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
-0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.1
-0.8
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.3
-0.6
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+0.1
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.2
-0.4
N.D.
growth on ypd
YPD
N.D.
+0.6
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.6
+0.5
-0.1
N.D.
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