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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8985 and 8986 are separated by 218 nucleotides
8986 and 8987 are separated by 884 nucleotides
8987 and 8988 are separated by 564 nucleotides
8988 and 8989 are separated by 1423 nucleotides
mRNA_617: 8985 - Hypothetical Protein, at 1,482,185 to 1,482,679
8985
mRNA_618: 8986 - HMMPfam-PX domain-PF00787,ProSiteProfiles-PX domain profile.-PS50195,SUPERFAMILY--SSF64268, at 1,482,898 to 1,485,797
8986
mRNA_619: 8987 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1,486,682 to 1,488,921
8987
mRNA_620: 8988 - K17742 SOU1 sorbose reductase, at 1,489,486 to 1,490,787
8988
mRNA_621: 8989 - K14405 FIP1L1, FIP1 pre-mRNA 3'-end-processing factor FIP1, at 1,492,211 to 1,493,623
8989
Group
Condition
mRNA
_617
mRNA
_618
mRNA
_619
mRNA
_620
mRNA
_621
8985
8986
8987
8988
8989
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.2
+0.2
N.D.
growth on ypd
YPD
-0.3
-0.3
-0.2
+0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
+0.4
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.1
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.3
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.1
+0.4
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.3
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
+0.3
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
+0.7
-0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.5
-0.0
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.4
+0.2
+0.1
N.D.
auxotrophy
Dropout Complete
+0.5
+0.2
+0.3
+0.3
N.D.
auxotrophy
YNB Glucose
+0.5
+0.4
+0.2
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.4
+0.4
+0.3
N.D.
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