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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8986 and 8987 are separated by 884 nucleotides
8987 and 8988 are separated by 564 nucleotides
8988 and 8989 are separated by 1423 nucleotides
8989 and 8990 are separated by 136 nucleotides
mRNA_618: 8986 - HMMPfam-PX domain-PF00787,ProSiteProfiles-PX domain profile.-PS50195,SUPERFAMILY--SSF64268, at 1,482,898 to 1,485,797
8986
mRNA_619: 8987 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1,486,682 to 1,488,921
8987
mRNA_620: 8988 - K17742 SOU1 sorbose reductase, at 1,489,486 to 1,490,787
8988
mRNA_621: 8989 - K14405 FIP1L1, FIP1 pre-mRNA 3'-end-processing factor FIP1, at 1,492,211 to 1,493,623
8989
mRNA_622: 8990 - K18156 ATP23, XRCC6BP1 mitochondrial inner membrane protease ATP23, at 1,493,760 to 1,494,779
8990
Group
Condition
mRNA
_618
mRNA
_619
mRNA
_620
mRNA
_621
mRNA
_622
8986
8987
8988
8989
8990
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
-0.0
N.D.
N.D.
growth on ypd
YPD
-0.3
-0.2
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.4
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.2
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.1
+0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.7
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
+0.3
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.4
+0.2
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.4
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.0
+0.6
N.D.
N.D.
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