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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8995 and 8997 are separated by 260 nucleotides
8997 and 8996 are separated by 362 nucleotides
8996 and 8998 are separated by 944 nucleotides
8998 and 8999 are separated by 873 nucleotides
mRNA_627: 8995 - HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1,504,190 to 1,505,264
8995
mRNA_629: 8997 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 1,505,525 to 1,506,625
8997
mRNA_628: 8996 - K17894 GATA2 GATA-binding protein 2, at 1,506,988 to 1,510,110
8996
mRNA_630: 8998 - K10088 OS9 protein OS-9, at 1,511,055 to 1,513,202
8998
mRNA_631: 8999 - Hypothetical Protein, at 1,514,076 to 1,515,222
8999
Group
Condition
mRNA
_627
mRNA
_629
mRNA
_628
mRNA
_630
mRNA
_631
8995
8997
8996
8998
8999
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-2.0
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-2.1
+0.5
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.9
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.7
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.9
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.7
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.9
-0.1
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.8
+0.6
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.4
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.9
+0.3
+0.5
auxotrophy
YNB Glucose
N.D.
N.D.
-0.9
+0.4
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.1
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.3
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.5
+0.4
+0.5
growth on ypd
YPD
N.D.
N.D.
+0.4
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.7
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+2.5
-0.4
-0.2
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