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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8996 and 8998 are separated by 944 nucleotides
8998 and 8999 are separated by 873 nucleotides
8999 and 9000 are separated by 1045 nucleotides
9000 and 9001 are separated by 272 nucleotides
mRNA_628: 8996 - K17894 GATA2 GATA-binding protein 2, at 1,506,988 to 1,510,110
8996
mRNA_630: 8998 - K10088 OS9 protein OS-9, at 1,511,055 to 1,513,202
8998
mRNA_631: 8999 - Hypothetical Protein, at 1,514,076 to 1,515,222
8999
mRNA_632: 9000 - K17900 ATG15, AUT5 lipase ATG15, at 1,516,268 to 1,517,647
9000
mRNA_633: 9001 - K14575 AFG2, DRG1, SPATA5 AAA family ATPase, at 1,517,920 to 1,520,918
9001
Group
Condition
mRNA
_628
mRNA
_630
mRNA
_631
mRNA
_632
mRNA
_633
8996
8998
8999
9000
9001
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
+0.4
-5.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
+0.1
-0.0
-3.9
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+2.5
-0.4
-0.2
-5.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
-0.2
-1.9
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
+0.1
-0.3
-1.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.0
+0.2
-0.3
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.2
-0.0
-1.3
N.D.
growth on ricinoleic acid
YNB Glucose
-2.1
+0.5
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.9
-0.1
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.5
+0.2
-0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+0.6
+0.0
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
-0.1
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
-0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.9
-0.1
+0.6
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.9
+0.3
+0.5
+0.2
N.D.
auxotrophy
YNB Glucose
-0.9
+0.4
+0.6
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.1
+0.1
N.D.
auxotrophy
Dropout Complete
-0.3
+0.1
+0.4
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.7
+0.3
+0.2
-0.5
N.D.
growth on oleic acid
YNB Glucose
-0.5
+0.4
+0.5
+0.3
N.D.
growth on ypd
YPD
+0.4
-0.1
+0.2
+0.4
N.D.
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