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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8998 and 8999 are separated by 873 nucleotides
8999 and 9000 are separated by 1045 nucleotides
9000 and 9001 are separated by 272 nucleotides
9001 and 9002 are separated by 94 nucleotides
mRNA_630: 8998 - K10088 OS9 protein OS-9, at 1,511,055 to 1,513,202
8998
mRNA_631: 8999 - Hypothetical Protein, at 1,514,076 to 1,515,222
8999
mRNA_632: 9000 - K17900 ATG15, AUT5 lipase ATG15, at 1,516,268 to 1,517,647
9000
mRNA_633: 9001 - K14575 AFG2, DRG1, SPATA5 AAA family ATPase, at 1,517,920 to 1,520,918
9001
mRNA_634: 9002 - K18932 ZDHHC palmitoyltransferase, at 1,521,013 to 1,522,610
9002
Group
Condition
mRNA
_630
mRNA
_631
mRNA
_632
mRNA
_633
mRNA
_634
8998
8999
9000
9001
9002
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.2
-5.3
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
-5.4
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-3.9
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
-1.9
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-1.5
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
-1.3
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.0
-1.0
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
-0.7
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
-0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
-0.5
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
+0.0
-0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.6
+0.3
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
+0.4
+0.1
N.D.
+0.2
growth on ypd
YPD
-0.1
+0.2
+0.4
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.5
+0.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.4
+0.5
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose
+0.4
+0.6
+0.1
N.D.
+0.1
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