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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9001 and 9002 are separated by 94 nucleotides
9002 and 9003 are separated by 3972 nucleotides
9003 and 9004 are separated by 122 nucleotides
9004 and 9005 are separated by 108 nucleotides
mRNA_633: 9001 - K14575 AFG2, DRG1, SPATA5 AAA family ATPase, at 1,517,920 to 1,520,918
9001
mRNA_634: 9002 - K18932 ZDHHC palmitoyltransferase, at 1,521,013 to 1,522,610
9002
mRNA_635: 9003 - KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins, at 1,526,583 to 1,528,432
9003
mRNA_636: 9004 - Hypothetical Protein, at 1,528,555 to 1,529,690
9004
mRNA_637: 9005 - K02516 PRMT5, HSL7 type II protein arginine methyltransferase, at 1,529,799 to 1,532,897
9005
Group
Condition
mRNA
_633
mRNA
_634
mRNA
_635
mRNA
_636
mRNA
_637
9001
9002
9003
9004
9005
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-1.2
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-1.1
-0.1
N.D.
growth on ypd
YPD
N.D.
+0.3
-1.0
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.1
-1.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.9
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.7
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.6
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.9
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.8
+0.3
N.D.
auxotrophy
Dropout Complete
N.D.
+0.2
-1.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.8
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.9
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.5
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.4
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.2
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.4
+0.2
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
-1.0
+1.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.4
+0.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.6
+0.1
N.D.
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