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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9004 and 9005 are separated by 108 nucleotides
9005 and 9006 are separated by 470 nucleotides
9006 and 9007 are separated by 794 nucleotides
9007 and 9008 are separated by 181 nucleotides
mRNA_636: 9004 - Hypothetical Protein, at 1,528,555 to 1,529,690
9004
mRNA_637: 9005 - K02516 PRMT5, HSL7 type II protein arginine methyltransferase, at 1,529,799 to 1,532,897
9005
mRNA_638: 9006 - K02947 RP-S10e, RPS10 small subunit ribosomal protein S10e, at 1,533,368 to 1,534,142
9006
mRNA_639: 9007 - K18027 PTPN3, PTPH1 tyrosine-protein phosphatase non-receptor type 3, at 1,534,937 to 1,536,294
9007
mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1,536,476 to 1,538,269
9008
Group
Condition
mRNA
_636
mRNA
_637
mRNA
_638
mRNA
_639
mRNA
_640
9004
9005
9006
9007
9008
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
N.D.
N.D.
+0.2
-4.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
N.D.
+0.3
-2.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
N.D.
+0.2
-1.4
growth on ypd
YPD
-0.5
N.D.
N.D.
+0.1
-0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
N.D.
-0.0
-0.7
auxotrophy
Dropout Complete
+0.3
N.D.
N.D.
-0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
N.D.
-0.2
+0.3
growth on oleic acid
YNB Glucose
-0.2
N.D.
N.D.
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
N.D.
+0.3
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.6
N.D.
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
N.D.
-0.2
+0.7
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.5
N.D.
N.D.
-0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
N.D.
-0.0
+0.6
auxotrophy
YNB Glucose
+1.0
N.D.
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
N.D.
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
N.D.
+0.2
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
N.D.
+0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
N.D.
+0.3
+1.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
N.D.
N.D.
+0.1
+0.8
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