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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9006 and 9007 are separated by 794 nucleotides
9007 and 9008 are separated by 181 nucleotides
9008 and 9009 are separated by 122 nucleotides
9009 and 9010 are separated by 338 nucleotides
mRNA_638: 9006 - K02947 RP-S10e, RPS10 small subunit ribosomal protein S10e, at 1,533,368 to 1,534,142
9006
mRNA_639: 9007 - K18027 PTPN3, PTPH1 tyrosine-protein phosphatase non-receptor type 3, at 1,534,937 to 1,536,294
9007
mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1,536,476 to 1,538,269
9008
mRNA_641: 9009 - K08333 PIK3R4, VPS15 phosphoinositide-3-kinase, regulatory subunit 4, at 1,538,392 to 1,544,328
9009
mRNA_642: 9010 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,544,667 to 1,546,033
9010
Group
Condition
mRNA
_638
mRNA
_639
mRNA
_640
mRNA
_641
mRNA
_642
9006
9007
9008
9009
9010
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-4.0
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-2.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-1.4
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.5
-0.5
N.D.
growth on ypd
YPD
N.D.
+0.1
-0.9
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.7
+0.2
N.D.
auxotrophy
Dropout Complete
N.D.
-0.1
-0.4
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.3
+0.2
N.D.
auxotrophy
YNB Glucose
N.D.
-0.1
-0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.3
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.0
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.5
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.7
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+1.0
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.7
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.7
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.3
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.6
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.5
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.8
+0.1
N.D.
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