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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9007 and 9008 are separated by 181 nucleotides
9008 and 9009 are separated by 122 nucleotides
9009 and 9010 are separated by 338 nucleotides
9010 and 9011 are separated by 169 nucleotides
mRNA_639: 9007 - K18027 PTPN3, PTPH1 tyrosine-protein phosphatase non-receptor type 3, at 1,534,937 to 1,536,294
9007
mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1,536,476 to 1,538,269
9008
mRNA_641: 9009 - K08333 PIK3R4, VPS15 phosphoinositide-3-kinase, regulatory subunit 4, at 1,538,392 to 1,544,328
9009
mRNA_642: 9010 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,544,667 to 1,546,033
9010
mRNA_643: 9011 - K15117 SLC25A34_35, OAC1 solute carrier family 25, member 34/35, at 1,546,203 to 1,548,129
9011
Group
Condition
mRNA
_639
mRNA
_640
mRNA
_641
mRNA
_642
mRNA
_643
9007
9008
9009
9010
9011
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-4.0
-0.0
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-2.0
-0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.4
-0.3
N.D.
-0.2
growth on ypd
YPD
+0.1
-0.9
+0.3
N.D.
-0.1
auxotrophy
Dropout Complete
-0.1
-0.4
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.7
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
-0.5
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
+0.3
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.5
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+0.2
N.D.
+0.3
auxotrophy
YNB Glucose
-0.1
-0.3
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.7
+0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.7
-0.0
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+1.0
-0.7
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
+0.4
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.0
+0.3
+0.6
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
+0.6
+0.3
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.2
+0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.7
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.8
+0.1
N.D.
+0.0
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