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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9013 and 9014 are separated by 1511 nucleotides
9014 and 9015 are separated by 542 nucleotides
9015 and 9016 are separated by 286 nucleotides
9016 and 9017 are separated by 168 nucleotides
mRNA_645: 9013 - KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis, at 1,550,382 to 1,551,455
9013
mRNA_646: 9014 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1,552,967 to 1,555,102
9014
mRNA_647: 9015 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1,555,645 to 1,557,271
9015
mRNA_648: 9016 - K03424 tatD TatD DNase family protein, at 1,557,558 to 1,558,767
9016
mRNA_649: 9017 - K15192 BTAF1, MOT1 TATA-binding protein-associated factor, at 1,558,936 to 1,565,576
9017
Group
Condition
mRNA
_645
mRNA
_646
mRNA
_647
mRNA
_648
mRNA
_649
9013
9014
9015
9016
9017
ypd buoyancy
40 hrs No Buoyancy Separation
-2.8
+0.2
-0.8
-0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.4
-0.2
+0.7
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.1
+0.6
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.4
-0.5
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
-0.3
+0.1
N.D.
auxotrophy
YNB Glucose
-0.4
-0.2
-0.2
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
+0.2
+0.1
N.D.
auxotrophy
Dropout Complete
-0.1
-0.3
-0.0
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
+0.0
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.2
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
-0.2
-0.2
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.7
-0.4
+0.5
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
-0.0
-0.2
+0.1
N.D.
growth on ypd
YPD
+1.1
-0.1
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.4
-0.0
+0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.6
-0.3
+0.7
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.9
-0.1
-0.0
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.7
-0.0
+0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.9
-0.1
+0.3
+0.1
N.D.
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