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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9014 and 9015 are separated by 542 nucleotides
9015 and 9016 are separated by 286 nucleotides
9016 and 9017 are separated by 168 nucleotides
9017 and 9018 are separated by 191 nucleotides
mRNA_646: 9014 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1,552,967 to 1,555,102
9014
mRNA_647: 9015 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1,555,645 to 1,557,271
9015
mRNA_648: 9016 - K03424 tatD TatD DNase family protein, at 1,557,558 to 1,558,767
9016
mRNA_649: 9017 - K15192 BTAF1, MOT1 TATA-binding protein-associated factor, at 1,558,936 to 1,565,576
9017
mRNA_650: 9018 - KOG0603 Ribosomal protein S6 kinase, at 1,565,768 to 1,568,049
9018
Group
Condition
mRNA
_646
mRNA
_647
mRNA
_648
mRNA
_649
mRNA
_650
9014
9015
9016
9017
9018
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.8
-0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.5
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
-0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
+0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+0.1
N.D.
-0.2
auxotrophy
Dropout Complete
-0.3
-0.0
+0.4
N.D.
-0.3
growth on ypd
YPD
-0.1
-0.2
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.2
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.6
-0.4
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
+0.6
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose
-0.2
-0.2
+0.5
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.4
+0.5
+0.0
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.7
-0.4
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
+0.1
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.3
+0.7
+0.3
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.4
+0.1
N.D.
+0.2
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