Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9018 and 9019 are separated by 155 nucleotides9019 and 9020 are separated by 1085 nucleotides9020 and 9021 are separated by 294 nucleotides9021 and 9022 are separated by 508 nucleotides mRNA_650: 9018 - KOG0603 Ribosomal protein S6 kinase, at 1,565,768 to 1,568,049 9018 mRNA_651: 9019 - Hypothetical Protein, at 1,568,205 to 1,569,102 9019 mRNA_652: 9020 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,570,188 to 1,571,223 9020 mRNA_653: 9021 - HMMPfam-RTA1 like protein-PF04479, at 1,571,518 to 1,572,791 9021 mRNA_654: 9022 - K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4, at 1,573,300 to 1,575,930 9022
Group Condition mRNA_650 mRNA_651 mRNA_652 mRNA_653 mRNA_654
9018 9019 9020 9021 9022
growth on ricinoleic acid YNB Glucose -0.6 N.D. -0.2 +0.0 N.D.
growth on ypd YPD -0.2 N.D. -0.4 -0.1 N.D.
growth on oleic acid YNB Glucose -0.4 N.D. -0.5 +0.3 N.D.
growth on oleic acid YNB Oleic Acid -0.2 N.D. -0.3 -0.0 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 N.D. -0.5 +0.2 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 N.D. -0.2 +0.2 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.3 N.D. -0.0 -0.5 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.0 N.D. +0.3 -0.6 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 N.D. +0.0 +0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 N.D. +0.3 -0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 N.D. -0.2 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.0 N.D. -0.1 +0.0 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.2 N.D. +0.1 +0.2 N.D.
auxotrophy Dropout Complete -0.3 N.D. -0.2 +0.6 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.1 N.D. +0.1 +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.0 N.D. +0.1 +0.0 N.D.
auxotrophy YNB Glucose -0.2 N.D. +0.2 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 N.D. +0.1 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 N.D. +0.3 +0.2 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 N.D. +0.5 +0.6 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 N.D. +0.8 +0.7 N.D.
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