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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9020 and 9021 are separated by 294 nucleotides
9021 and 9022 are separated by 508 nucleotides
9022 and 9023 are separated by 283 nucleotides
9023 and 9024 are separated by 1140 nucleotides
mRNA_652: 9020 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,570,188 to 1,571,223
9020
mRNA_653: 9021 - HMMPfam-RTA1 like protein-PF04479, at 1,571,518 to 1,572,791
9021
mRNA_654: 9022 - K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4, at 1,573,300 to 1,575,930
9022
mRNA_655: 9023 - K11246 SHO1 SHO1 osmosensor, at 1,576,214 to 1,578,020
9023
mRNA_656: 9024 - Hypothetical Protein, at 1,579,161 to 1,580,144
9024
Group
Condition
mRNA
_652
mRNA
_653
mRNA
_654
mRNA
_655
mRNA
_656
9020
9021
9022
9023
9024
growth on ypd
YPD
-0.4
-0.1
N.D.
+0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.5
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
N.D.
-0.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
N.D.
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.5
+0.3
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.6
N.D.
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
N.D.
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.2
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
N.D.
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
N.D.
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
N.D.
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
N.D.
+0.6
+0.1
auxotrophy
Dropout Complete
-0.2
+0.6
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
N.D.
+0.1
+0.4
auxotrophy
YNB Glucose
+0.2
+0.3
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.7
N.D.
-0.8
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
N.D.
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.6
N.D.
+0.1
+0.3
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