Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9020 and 9021 are separated by 294 nucleotides9021 and 9022 are separated by 508 nucleotides9022 and 9023 are separated by 283 nucleotides9023 and 9024 are separated by 1140 nucleotides mRNA_652: 9020 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,570,188 to 1,571,223 9020 mRNA_653: 9021 - HMMPfam-RTA1 like protein-PF04479, at 1,571,518 to 1,572,791 9021 mRNA_654: 9022 - K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4, at 1,573,300 to 1,575,930 9022 mRNA_655: 9023 - K11246 SHO1 SHO1 osmosensor, at 1,576,214 to 1,578,020 9023 mRNA_656: 9024 - Hypothetical Protein, at 1,579,161 to 1,580,144 9024
Group Condition mRNA_652 mRNA_653 mRNA_654 mRNA_655 mRNA_656
9020 9021 9022 9023 9024
growth on ypd YPD -0.4 -0.1 N.D. +0.1 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.0 -0.5 N.D. -0.2 +0.2
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.0 N.D. -0.7 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -0.1 N.D. -0.1 -0.1
growth on oleic acid YNB Glucose -0.5 +0.3 N.D. -0.3 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.3 -0.6 N.D. -0.2 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.0 N.D. +0.2 -0.4
growth on ricinoleic acid YNB Glucose -0.2 +0.0 N.D. +0.1 +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.5 +0.2 N.D. +0.0 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 +0.2 N.D. -0.3 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 -0.1 N.D. -0.0 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.1 +0.2 N.D. -0.0 -0.0
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.1 N.D. -0.2 +0.1
growth on oleic acid YNB Oleic Acid -0.3 -0.0 N.D. +0.6 +0.1
auxotrophy Dropout Complete -0.2 +0.6 N.D. -0.1 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 +0.2 N.D. +0.1 +0.4
auxotrophy YNB Glucose +0.2 +0.3 N.D. +0.0 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.3 N.D. +0.1 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.8 +0.7 N.D. -0.8 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 +0.2 N.D. +0.1 +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.5 +0.6 N.D. +0.1 +0.3
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