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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9022 and 9023 are separated by 283 nucleotides
9023 and 9024 are separated by 1140 nucleotides
9024 and 9025 are separated by 1115 nucleotides
9025 and 9026 are separated by 258 nucleotides
mRNA_654: 9022 - K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4, at 1,573,300 to 1,575,930
9022
mRNA_655: 9023 - K11246 SHO1 SHO1 osmosensor, at 1,576,214 to 1,578,020
9023
mRNA_656: 9024 - Hypothetical Protein, at 1,579,161 to 1,580,144
9024
mRNA_657: 9025 - Hypothetical Protein, at 1,581,260 to 1,582,108
9025
mRNA_658: 9026 - K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46, at 1,582,367 to 1,585,803
9026
Group
Condition
mRNA
_654
mRNA
_655
mRNA
_656
mRNA
_657
mRNA
_658
9022
9023
9024
9025
9026
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
-0.9
-2.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.8
+0.2
-1.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.4
-0.8
-1.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.1
-0.4
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.7
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.0
+0.1
-0.4
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+0.2
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.1
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
-0.3
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.2
-0.1
-0.1
auxotrophy
Dropout Complete
N.D.
-0.1
+0.1
+0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.0
+0.6
-0.6
growth on ypd
YPD
N.D.
+0.1
-0.3
+0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.4
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-0.1
+0.5
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.5
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.6
+0.1
+0.2
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.2
+0.8
+1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.1
+0.9
+1.8
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