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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9026 and 9027 are separated by 687 nucleotides
9027 and 9028 are separated by 134 nucleotides
9028 and 9029 are separated by 754 nucleotides
9029 and 9030 are separated by 352 nucleotides
mRNA_658: 9026 - K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46, at 1,582,367 to 1,585,803
9026
mRNA_659: 9027 - Hypothetical Protein, at 1,586,491 to 1,589,993
9027
mRNA_660: 9028 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 1,590,128 to 1,592,290
9028
mRNA_661: 9029 - Hypothetical Protein, at 1,593,045 to 1,593,501
9029
mRNA_662: 9030 - HMMPfam-EF-hand domain pair-PF13499,ProSitePatterns-EF-hand calcium-binding domain.-PS00018,ProSiteProfiles-EF-hand calcium-binding domain profile.-PS50222,SUPERFAMILY--SSF47473, at 1,593,854 to 1,595,354
9030
Group
Condition
mRNA
_658
mRNA
_659
mRNA
_660
mRNA
_661
mRNA
_662
9026
9027
9028
9029
9030
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.0
-0.3
-0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
+0.1
+0.3
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.0
-0.4
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.5
+0.2
-0.2
+0.1
+0.5
auxotrophy
Dropout Complete
-0.5
+0.3
-0.1
+0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
+0.9
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.3
+0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
-0.6
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.3
+0.2
+0.1
+0.2
growth on ypd
YPD
-0.2
+0.4
-0.1
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.3
+0.3
-0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
+0.4
-0.1
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
+0.7
-0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
-0.1
+0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
-0.5
+0.1
+0.4
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.1
+0.3
+0.2
auxotrophy
YNB Glucose
-0.3
+0.4
+0.1
+0.1
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.8
-0.1
+0.6
growth on oleic acid
YNB Oleic Acid
+0.5
+0.1
+0.4
+0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
+0.2
-0.2
+0.3
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.8
+0.2
-0.1
+0.0
+0.0
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