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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9028 and 9029 are separated by 754 nucleotides
9029 and 9030 are separated by 352 nucleotides
9030 and 9031 are separated by 338 nucleotides
9031 and 9032 are separated by 363 nucleotides
mRNA_660: 9028 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 1,590,128 to 1,592,290
9028
mRNA_661: 9029 - Hypothetical Protein, at 1,593,045 to 1,593,501
9029
mRNA_662: 9030 - HMMPfam-EF-hand domain pair-PF13499,ProSitePatterns-EF-hand calcium-binding domain.-PS00018,ProSiteProfiles-EF-hand calcium-binding domain profile.-PS50222,SUPERFAMILY--SSF47473, at 1,593,854 to 1,595,354
9030
mRNA_663: 9031 - SUPERFAMILY--SSF103196, at 1,595,693 to 1,596,287
9031
mRNA_664: 9032 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,SUPERFAMILY--SSF51197, at 1,596,651 to 1,602,461
9032
Group
Condition
mRNA
_660
mRNA
_661
mRNA
_662
mRNA
_663
mRNA
_664
9028
9029
9030
9031
9032
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
+0.0
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.0
+0.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.2
+0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
-0.2
N.D.
+0.1
auxotrophy
Dropout Complete
-0.1
+0.1
+0.4
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
+0.5
N.D.
-0.4
growth on ypd
YPD
-0.1
-0.0
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
+0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
+0.4
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
+0.5
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.5
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
+0.0
+0.0
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.0
+0.5
N.D.
+0.0
auxotrophy
YNB Glucose
+0.1
+0.1
+0.6
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.1
+0.6
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
+0.2
+0.3
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.8
-0.1
+0.6
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.0
+0.4
N.D.
+0.0
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