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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9032 and 9033 are separated by 260 nucleotides
9033 and 9034 are separated by 60 nucleotides
9034 and 9035 are separated by 111 nucleotides
9035 and 9036 are separated by 277 nucleotides
mRNA_664: 9032 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,SUPERFAMILY--SSF51197, at 1,596,651 to 1,602,461
9032
mRNA_665: 9033 - K08853 AAK AP2-associated kinase, at 1,602,722 to 1,607,021
9033
mRNA_666: 9034 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1,607,082 to 1,608,088
9034
mRNA_667: 9035 - Interpro Ribosome associated membrane protein RAMP4, at 1,608,200 to 1,608,918
9035
mRNA_668: 9036 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,609,196 to 1,610,811
9036
Group
Condition
mRNA
_664
mRNA
_665
mRNA
_666
mRNA
_667
mRNA
_668
9032
9033
9034
9035
9036
auxotrophy
Dropout Complete
-0.1
-1.0
-1.1
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-1.2
-0.4
-0.7
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.8
-0.8
-0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-2.0
+0.5
-0.8
+0.5
auxotrophy
YNB Glucose
+0.1
-1.1
-0.5
-0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.9
-0.7
-0.3
-0.1
growth on oleic acid
YNB Glucose
+0.1
-0.8
+0.0
-0.9
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.3
+0.1
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.5
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.5
+0.2
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.9
+0.3
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-1.0
+0.9
+0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.8
+0.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.8
-0.1
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.5
+0.3
-0.2
+0.1
growth on ypd
YPD
+0.2
-0.3
+0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
-0.1
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.2
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.2
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.1
+0.2
+0.3
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