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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9034 and 9035 are separated by 111 nucleotides
9035 and 9036 are separated by 277 nucleotides
9036 and 9037 are separated by 667 nucleotides
9037 and 9038 are separated by 873 nucleotides
mRNA_666: 9034 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1,607,082 to 1,608,088
9034
mRNA_667: 9035 - Interpro Ribosome associated membrane protein RAMP4, at 1,608,200 to 1,608,918
9035
mRNA_668: 9036 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,609,196 to 1,610,811
9036
mRNA_669: 9037 - K01689 ENO, eno enolase, at 1,611,479 to 1,614,227
9037
mRNA_670: 9038 - Hypothetical Protein, at 1,615,101 to 1,618,146
9038
Group
Condition
mRNA
_666
mRNA
_667
mRNA
_668
mRNA
_669
mRNA
_670
9034
9035
9036
9037
9038
auxotrophy
Dropout Complete
-1.1
-0.3
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.7
+0.0
N.D.
+0.1
auxotrophy
YNB Glucose
-0.5
-0.6
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.3
-0.1
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.9
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.3
+0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.0
+0.1
N.D.
-0.0
growth on ypd
YPD
+0.1
-0.2
+0.2
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
+0.2
-0.4
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.1
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.8
+0.5
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.5
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.5
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
+0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
+0.3
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
+0.3
-0.4
N.D.
+0.1
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