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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9036 and 9037 are separated by 667 nucleotides
9037 and 9038 are separated by 873 nucleotides
9038 and 9039 are separated by 326 nucleotides
9039 and 9040 are separated by 63 nucleotides
mRNA_668: 9036 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,609,196 to 1,610,811
9036
mRNA_669: 9037 - K01689 ENO, eno enolase, at 1,611,479 to 1,614,227
9037
mRNA_670: 9038 - Hypothetical Protein, at 1,615,101 to 1,618,146
9038
mRNA_671: 9039 - K03846 ALG9 alpha-1,2-mannosyltransferase, at 1,618,473 to 1,620,853
9039
mRNA_672: 9040 - Hypothetical Protein, at 1,620,917 to 1,621,557
9040
Group
Condition
mRNA
_668
mRNA
_669
mRNA
_670
mRNA
_671
mRNA
_672
9036
9037
9038
9039
9040
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
+0.0
-1.2
-0.6
auxotrophy
Dropout Complete
-0.1
N.D.
-0.1
-0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.0
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.1
-0.5
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.0
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.1
+0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.4
-0.6
-0.0
growth on ypd
YPD
+0.2
N.D.
-0.4
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.1
+0.2
-0.3
auxotrophy
YNB Glucose
+0.1
N.D.
+0.1
-0.4
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.0
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.2
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.2
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.0
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.1
+0.3
+0.4
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.1
+0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.4
+0.3
-0.0
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