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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9038 and 9039 are separated by 326 nucleotides
9039 and 9040 are separated by 63 nucleotides
9040 and 9041 are separated by 833 nucleotides
9041 and 9042 are separated by 574 nucleotides
mRNA_670: 9038 - Hypothetical Protein, at 1,615,101 to 1,618,146
9038
mRNA_671: 9039 - K03846 ALG9 alpha-1,2-mannosyltransferase, at 1,618,473 to 1,620,853
9039
mRNA_672: 9040 - Hypothetical Protein, at 1,620,917 to 1,621,557
9040
mRNA_673: 9041 - BLAST chordin [Novocrania anomala], at 1,622,391 to 1,622,567
9041
mRNA_674: 9042 - K04382 PPP2C serine/threonine-protein phosphatase 2A catalytic subunit, at 1,623,142 to 1,624,836
9042
Group
Condition
mRNA
_670
mRNA
_671
mRNA
_672
mRNA
_673
mRNA
_674
9038
9039
9040
9041
9042
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-1.2
-0.6
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
-0.4
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
-0.4
N.D.
N.D.
growth on ypd
YPD
-0.4
+0.0
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.6
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
-0.4
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.3
-0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+0.4
N.D.
N.D.
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