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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9050 and 9051 are separated by 553 nucleotides
9051 and 9052 are separated by 157 nucleotides
9052 and 9053 are separated by 333 nucleotides
9053 and 9054 are separated by 513 nucleotides
mRNA_682: 9050 - K01487 E3.5.4.3, guaD guanine deaminase, at 1,636,253 to 1,638,256
9050
mRNA_683: 9051 - K01613 psd, PISD phosphatidylserine decarboxylase, at 1,638,810 to 1,640,262
9051
mRNA_684: 9052 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,640,420 to 1,643,110
9052
mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1,643,444 to 1,644,500
9053
mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1,645,014 to 1,645,916
9054
Group
Condition
mRNA
_682
mRNA
_683
mRNA
_684
mRNA
_685
mRNA
_686
9050
9051
9052
9053
9054
growth on ypd
YPD
-0.7
-0.2
+0.1
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-1.0
-0.1
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.0
+0.0
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.6
+0.1
N.D.
-0.1
auxotrophy
Dropout Complete
-0.3
-0.1
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
+0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.4
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose
+0.0
-0.2
-0.0
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.3
-0.0
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
+0.0
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.5
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.2
-0.0
N.D.
+0.1
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