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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9051 and 9052 are separated by 157 nucleotides
9052 and 9053 are separated by 333 nucleotides
9053 and 9054 are separated by 513 nucleotides
9054 and 9055 are separated by 599 nucleotides
mRNA_683: 9051 - K01613 psd, PISD phosphatidylserine decarboxylase, at 1,638,810 to 1,640,262
9051
mRNA_684: 9052 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,640,420 to 1,643,110
9052
mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1,643,444 to 1,644,500
9053
mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1,645,014 to 1,645,916
9054
mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,646,516 to 1,647,919
9055
Group
Condition
mRNA
_683
mRNA
_684
mRNA
_685
mRNA
_686
mRNA
_687
9051
9052
9053
9054
9055
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.1
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.1
N.D.
+0.6
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.1
N.D.
-0.3
+0.0
auxotrophy
YNB Glucose
-0.2
-0.0
N.D.
+0.1
-0.3
auxotrophy
Dropout Complete
-0.1
-0.1
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.0
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.0
N.D.
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.0
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
N.D.
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.0
N.D.
+0.4
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
N.D.
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
N.D.
+0.0
+0.1
growth on ypd
YPD
-0.2
+0.1
N.D.
-0.2
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.1
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
N.D.
+0.1
+0.4
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