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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9053 and 9054 are separated by 513 nucleotides
9054 and 9055 are separated by 599 nucleotides
9055 and 9056 are separated by 390 nucleotides
9056 and 9057 are separated by 522 nucleotides
mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1,643,444 to 1,644,500
9053
mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1,645,014 to 1,645,916
9054
mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,646,516 to 1,647,919
9055
mRNA_688: 9056 - Hypothetical Protein, at 1,648,310 to 1,648,900
9056
mRNA_689: 9057 - HMMPfam-Eisosome component PIL1-PF13805, at 1,649,423 to 1,652,202
9057
Group
Condition
mRNA
_685
mRNA
_686
mRNA
_687
mRNA
_688
mRNA
_689
9053
9054
9055
9056
9057
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.1
-1.4
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.1
-1.1
-0.4
auxotrophy
YNB Glucose
N.D.
+0.1
-0.3
-0.6
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.0
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.2
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.2
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.2
-0.2
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.0
-0.3
+0.1
auxotrophy
Dropout Complete
N.D.
+0.1
-0.3
-0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.4
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.1
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.4
+0.5
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
-0.5
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
+0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.1
+0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.3
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.0
+0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
+0.7
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.6
-0.1
+0.3
+0.2
growth on ypd
YPD
N.D.
-0.2
+0.8
+0.7
+0.5
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