Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9054 and 9055 are separated by 599 nucleotides9055 and 9056 are separated by 390 nucleotides9056 and 9057 are separated by 522 nucleotides9057 and 9058 are separated by 164 nucleotides mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1,645,014 to 1,645,916 9054 mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,646,516 to 1,647,919 9055 mRNA_688: 9056 - Hypothetical Protein, at 1,648,310 to 1,648,900 9056 mRNA_689: 9057 - HMMPfam-Eisosome component PIL1-PF13805, at 1,649,423 to 1,652,202 9057 mRNA_690: 9058 - HMMPfam-Tat binding protein 1(TBP-1)-interacting protein (TBPIP)-PF07106, at 1,652,367 to 1,653,596 9058
Group Condition mRNA_686 mRNA_687 mRNA_688 mRNA_689 mRNA_690
9054 9055 9056 9057 9058
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 +0.1 -1.4 -0.9 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 +0.1 -1.1 -0.4 N.D.
auxotrophy YNB Glucose +0.1 -0.3 -0.6 -0.1 N.D.
growth on ricinoleic acid YNB Glucose -0.2 +0.0 -0.3 -0.3 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.2 -0.5 -0.5 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 +0.2 -0.1 -0.6 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 +0.2 -0.2 -0.5 N.D.
growth on oleic acid YNB Glucose -0.3 +0.0 -0.3 +0.1 N.D.
auxotrophy Dropout Complete +0.1 -0.3 -0.4 +0.2 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.4 -0.1 -0.8 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.0 -0.1 -0.2 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.0 +0.1 -0.1 -0.5 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.4 +0.5 -0.6 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.4 -0.5 -0.3 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.2 +0.4 -0.4 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.1 +0.1 -0.5 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.3 -0.2 -0.3 N.D.
growth on oleic acid YNB Oleic Acid +0.1 +0.0 +0.6 -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.2 +0.2 +0.7 -0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.6 -0.1 +0.3 +0.2 N.D.
growth on ypd YPD -0.2 +0.8 +0.7 +0.5 N.D.
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