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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9056 and 9057 are separated by 522 nucleotides
9057 and 9058 are separated by 164 nucleotides
9058 and 9059 are separated by 590 nucleotides
9059 and 9060 are separated by 640 nucleotides
mRNA_688: 9056 - Hypothetical Protein, at 1,648,310 to 1,648,900
9056
mRNA_689: 9057 - HMMPfam-Eisosome component PIL1-PF13805, at 1,649,423 to 1,652,202
9057
mRNA_690: 9058 - HMMPfam-Tat binding protein 1(TBP-1)-interacting protein (TBPIP)-PF07106, at 1,652,367 to 1,653,596
9058
mRNA_691: 9059 - BLAST gliotoxin biosynthesis protein GliK [Marssonina b..., at 1,654,187 to 1,655,230
9059
mRNA_692: 9060 - K04459 DUSP, MKP dual specificity MAP kinase phosphatase, at 1,655,871 to 1,659,034
9060
Group
Condition
mRNA
_688
mRNA
_689
mRNA
_690
mRNA
_691
mRNA
_692
9056
9057
9058
9059
9060
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-0.9
N.D.
-1.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
-0.4
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.8
N.D.
-0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.5
N.D.
+0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.5
N.D.
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose
-0.6
-0.1
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
N.D.
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.6
N.D.
-0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
N.D.
+0.7
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
N.D.
-0.0
+0.2
auxotrophy
Dropout Complete
-0.4
+0.2
N.D.
-0.3
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
N.D.
-0.3
+0.5
growth on oleic acid
YNB Glucose
-0.3
+0.1
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.6
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.4
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.1
N.D.
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
N.D.
-0.2
+0.7
growth on oleic acid
YNB Oleic Acid
+0.6
-0.1
N.D.
+0.2
+0.4
growth on ypd
YPD
+0.7
+0.5
N.D.
+0.3
+0.0
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