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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9057 and 9058 are separated by 164 nucleotides
9058 and 9059 are separated by 590 nucleotides
9059 and 9060 are separated by 640 nucleotides
9060 and 9061 are separated by 220 nucleotides
mRNA_689: 9057 - HMMPfam-Eisosome component PIL1-PF13805, at 1,649,423 to 1,652,202
9057
mRNA_690: 9058 - HMMPfam-Tat binding protein 1(TBP-1)-interacting protein (TBPIP)-PF07106, at 1,652,367 to 1,653,596
9058
mRNA_691: 9059 - BLAST gliotoxin biosynthesis protein GliK [Marssonina b..., at 1,654,187 to 1,655,230
9059
mRNA_692: 9060 - K04459 DUSP, MKP dual specificity MAP kinase phosphatase, at 1,655,871 to 1,659,034
9060
mRNA_693: 9061 - Hypothetical Protein, at 1,659,255 to 1,659,647
9061
Group
Condition
mRNA
_689
mRNA
_690
mRNA
_691
mRNA
_692
mRNA
_693
9057
9058
9059
9060
9061
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
N.D.
-1.3
-0.2
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.1
+0.2
-1.4
ypd buoyancy
40 hrs High Buoyancy
-0.8
N.D.
-0.4
-0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.2
+0.7
-2.0
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
+0.3
+0.0
-0.9
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.3
+0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.5
N.D.
-0.4
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
-0.0
+0.3
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.3
+0.5
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
-0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
-0.3
+0.1
+0.1
auxotrophy
Dropout Complete
+0.2
N.D.
-0.3
+0.4
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+0.7
-0.4
-0.3
auxotrophy
YNB Glucose
-0.1
N.D.
-0.2
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
-0.2
+0.5
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
+0.4
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
+0.1
+0.0
+0.4
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.0
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.2
+0.4
-0.3
growth on ypd
YPD
+0.5
N.D.
+0.3
+0.0
+0.3
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