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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9060 and 9061 are separated by 220 nucleotides
9061 and 9062 are separated by 18 nucleotides
9062 and 9063 are separated by 50 nucleotides
9063 and 9064 are separated by 476 nucleotides
mRNA_692: 9060 - K04459 DUSP, MKP dual specificity MAP kinase phosphatase, at 1,655,871 to 1,659,034
9060
mRNA_693: 9061 - Hypothetical Protein, at 1,659,255 to 1,659,647
9061
mRNA_694: 9062 - Hypothetical Protein, at 1,659,666 to 1,660,992
9062
mRNA_695: 9063 - Hypothetical Protein, at 1,661,043 to 1,663,023
9063
mRNA_696: 9064 - K03754 EIF2B2 translation initiation factor eIF-2B subunit beta, at 1,663,500 to 1,665,283
9064
Group
Condition
mRNA
_692
mRNA
_693
mRNA
_694
mRNA
_695
mRNA
_696
9060
9061
9062
9063
9064
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-1.2
-0.1
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-2.0
+0.1
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.4
-0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.3
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.9
-0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.6
-0.3
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.6
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.3
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.9
+0.3
-0.2
N.D.
auxotrophy
Dropout Complete
+0.4
-0.6
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose
+0.3
-0.0
-0.4
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.4
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
+0.3
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.5
+0.2
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.3
-0.5
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
+0.2
+0.4
N.D.
growth on ypd
YPD
+0.0
+0.3
+0.1
+0.5
N.D.
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