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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9061 and 9062 are separated by 18 nucleotides
9062 and 9063 are separated by 50 nucleotides
9063 and 9064 are separated by 476 nucleotides
9064 and 9065 are separated by 221 nucleotides
mRNA_693: 9061 - Hypothetical Protein, at 1,659,255 to 1,659,647
9061
mRNA_694: 9062 - Hypothetical Protein, at 1,659,666 to 1,660,992
9062
mRNA_695: 9063 - Hypothetical Protein, at 1,661,043 to 1,663,023
9063
mRNA_696: 9064 - K03754 EIF2B2 translation initiation factor eIF-2B subunit beta, at 1,663,500 to 1,665,283
9064
mRNA_697: 9065 - KOG1389 3-oxoacyl CoA thiolase, at 1,665,505 to 1,667,348
9065
Group
Condition
mRNA
_693
mRNA
_694
mRNA
_695
mRNA
_696
mRNA
_697
9061
9062
9063
9064
9065
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.0
+0.1
-0.6
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.4
-0.1
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-0.1
-0.3
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
+0.3
-0.2
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.6
-0.1
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.3
+0.0
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.9
-0.0
+0.1
N.D.
+0.3
auxotrophy
Dropout Complete
-0.6
-0.2
+0.1
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose
-0.0
-0.4
+0.2
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.4
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.4
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
+0.2
N.D.
+0.2
growth on ypd
YPD
+0.3
+0.1
+0.5
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.2
+0.0
N.D.
+0.2
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