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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9065 and 9066 are separated by 682 nucleotides
9066 and 9067 are separated by 234 nucleotides
9067 and 9068 are separated by 220 nucleotides
9068 and 9069 are separated by 100 nucleotides
mRNA_697: 9065 - KOG1389 3-oxoacyl CoA thiolase, at 1,665,505 to 1,667,348
9065
mRNA_698: 9066 - K12188 SNF8, EAP30 ESCRT-II complex subunit VPS22, at 1,668,031 to 1,668,867
9066
mRNA_699: 9067 - K20289 COG2 conserved oligomeric Golgi complex subunit 2, at 1,669,102 to 1,672,155
9067
mRNA_700: 9068 - K12398 AP3M AP-3 complex subunit mu, at 1,672,376 to 1,674,226
9068
mRNA_701: 9069 - K08776 NPEPPS puromycin-sensitive aminopeptidase, at 1,674,327 to 1,678,341
9069
Group
Condition
mRNA
_697
mRNA
_698
mRNA
_699
mRNA
_700
mRNA
_701
9065
9066
9067
9068
9069
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-5.7
-0.2
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-5.9
-0.4
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-5.5
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-3.4
+0.6
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-3.4
+0.4
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-2.4
+0.4
N.D.
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.6
+0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-1.1
-0.4
N.D.
-0.1
growth on ypd
YPD
-0.2
-0.7
+0.6
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.3
-3.4
+2.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-2.2
+1.8
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.2
-1.2
+1.4
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose
+0.3
-2.0
+2.1
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-3.5
+3.8
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-1.7
+1.9
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.5
+0.7
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
+2.0
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-2.7
+3.9
N.D.
+0.2
auxotrophy
Dropout Complete
+0.4
-0.7
+2.0
N.D.
-0.0
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