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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9066 and 9067 are separated by 234 nucleotides
9067 and 9068 are separated by 220 nucleotides
9068 and 9069 are separated by 100 nucleotides
9069 and 9070 are separated by 500 nucleotides
mRNA_698: 9066 - K12188 SNF8, EAP30 ESCRT-II complex subunit VPS22, at 1,668,031 to 1,668,867
9066
mRNA_699: 9067 - K20289 COG2 conserved oligomeric Golgi complex subunit 2, at 1,669,102 to 1,672,155
9067
mRNA_700: 9068 - K12398 AP3M AP-3 complex subunit mu, at 1,672,376 to 1,674,226
9068
mRNA_701: 9069 - K08776 NPEPPS puromycin-sensitive aminopeptidase, at 1,674,327 to 1,678,341
9069
mRNA_702: 9070 - BLAST RAN guanine nucleotide release factor [Moesziomyces a..., at 1,678,842 to 1,679,928
9070
Group
Condition
mRNA
_698
mRNA
_699
mRNA
_700
mRNA
_701
mRNA
_702
9066
9067
9068
9069
9070
facs on lipid accumulation
Sorted No BODIPY Gate
-5.9
-0.4
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-5.7
-0.2
N.D.
-0.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-5.5
+0.0
N.D.
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-3.4
+0.6
N.D.
-1.0
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-3.4
+0.4
N.D.
-0.5
+1.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-2.4
+0.4
N.D.
-0.5
+0.6
growth on ricinoleic acid
YNB Glucose
-3.4
+2.4
N.D.
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.1
-0.4
N.D.
-0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
+0.2
N.D.
-0.3
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.7
+3.9
N.D.
+0.2
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-3.5
+3.8
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-2.2
+1.8
N.D.
+0.1
+0.5
growth on ypd
YPD
-0.7
+0.6
N.D.
-0.4
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
N.D.
+0.1
+0.6
auxotrophy
YNB Glucose
-2.0
+2.1
N.D.
-0.0
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-1.7
+1.9
N.D.
+0.1
+0.5
growth on oleic acid
YNB Glucose
-1.2
+1.4
N.D.
-0.1
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.7
N.D.
-0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.3
N.D.
+0.1
+0.8
auxotrophy
Dropout Complete
-0.7
+2.0
N.D.
-0.0
+0.8
growth on oleic acid
YNB Oleic Acid
-0.4
+2.0
N.D.
+0.2
+0.6
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