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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9071 and 9072 are separated by 489 nucleotides
9072 and 9073 are separated by 303 nucleotides
9073 and 9074 are separated by 350 nucleotides
9074 and 9075 are separated by 778 nucleotides
mRNA_703: 9071 - K20223 IPO7, RANBP7 importin-7, at 1,681,177 to 1,685,261
9071
mRNA_704: 9072 - Hypothetical Protein, at 1,685,751 to 1,686,578
9072
mRNA_705: 9073 - Hypothetical Protein, at 1,686,882 to 1,687,681
9073
mRNA_706: 9074 - BLAST Myelin gene regulatory factor [Chaetura pelagica], at 1,688,032 to 1,688,891
9074
mRNA_707: 9075 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,689,670 to 1,691,771
9075
Group
Condition
mRNA
_703
mRNA
_704
mRNA
_705
mRNA
_706
mRNA
_707
9071
9072
9073
9074
9075
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.4
-0.1
-0.4
-2.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.2
-0.2
-0.2
-1.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
+0.0
-0.5
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.3
+0.0
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
-0.2
-0.3
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.3
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
-0.6
-1.0
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
-0.3
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
+0.0
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.2
-0.3
+0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
+0.1
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.1
-0.2
+0.0
auxotrophy
YNB Glucose
+0.4
-0.2
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.0
-0.3
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
-0.1
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.4
-0.2
+0.3
-0.7
auxotrophy
Dropout Complete
+0.6
+0.2
-0.1
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.2
-0.3
+0.2
-0.1
growth on ypd
YPD
+0.3
-0.1
+0.6
-0.6
+0.4
growth on oleic acid
YNB Glucose
+0.3
+0.4
+0.0
+0.3
-0.1
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