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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9073 and 9074 are separated by 350 nucleotides
9074 and 9075 are separated by 778 nucleotides
9075 and 9076 are separated by 288 nucleotides
9076 and 9077 are separated by 1001 nucleotides
mRNA_705: 9073 - Hypothetical Protein, at 1,686,882 to 1,687,681
9073
mRNA_706: 9074 - BLAST Myelin gene regulatory factor [Chaetura pelagica], at 1,688,032 to 1,688,891
9074
mRNA_707: 9075 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,689,670 to 1,691,771
9075
mRNA_708: 9076 - HMMPfam-Ferritin-like domain-PF13668, at 1,692,060 to 1,693,397
9076
mRNA_709: 9077 - K08775 BRCA2, FANCD1 breast cancer 2 susceptibility protein, at 1,694,399 to 1,698,266
9077
Group
Condition
mRNA
_705
mRNA
_706
mRNA
_707
mRNA
_708
mRNA
_709
9073
9074
9075
9076
9077
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.4
-2.6
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-1.6
-0.1
-1.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.5
-0.7
-0.7
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
-0.7
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
-0.1
-0.4
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
-0.0
-0.0
-1.7
auxotrophy
Dropout Complete
-0.1
+0.2
-0.4
-0.0
-1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.0
-0.2
+0.0
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
-0.1
+0.1
-1.1
auxotrophy
YNB Glucose
-0.3
+0.1
-0.1
+0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.2
+0.4
-0.5
+0.4
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
+0.1
+0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
-0.0
+0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.2
+0.3
-0.7
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.2
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-0.1
-0.1
+0.5
growth on ypd
YPD
+0.6
-0.6
+0.4
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.0
+0.3
-0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.4
-0.0
-0.5
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
+0.1
-0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
+0.0
+0.0
+0.9
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