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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9075 and 9076 are separated by 288 nucleotides
9076 and 9077 are separated by 1001 nucleotides
9077 and 9078 are separated by 102 nucleotides
9078 and 9079 are separated by 549 nucleotides
mRNA_707: 9075 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,689,670 to 1,691,771
9075
mRNA_708: 9076 - HMMPfam-Ferritin-like domain-PF13668, at 1,692,060 to 1,693,397
9076
mRNA_709: 9077 - K08775 BRCA2, FANCD1 breast cancer 2 susceptibility protein, at 1,694,399 to 1,698,266
9077
mRNA_710: 9078 - Hypothetical Protein, at 1,698,369 to 1,699,949
9078
mRNA_711: 9079 - K00972 UAP1 UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase, at 1,700,499 to 1,702,038
9079
Group
Condition
mRNA
_707
mRNA
_708
mRNA
_709
mRNA
_710
mRNA
_711
9075
9076
9077
9078
9079
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.6
-0.1
-1.0
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.6
-0.2
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.7
-1.1
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.0
-1.7
-0.1
N.D.
auxotrophy
Dropout Complete
-0.4
-0.0
-1.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.1
-0.5
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-1.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
-0.8
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.5
+0.1
N.D.
auxotrophy
YNB Glucose
-0.1
+0.1
-0.7
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.7
+0.1
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
-0.4
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.4
-0.0
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.0
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
-0.4
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.5
+0.6
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.5
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.5
+0.4
+0.1
N.D.
growth on ypd
YPD
+0.4
-0.2
-0.1
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.6
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.9
-0.0
N.D.
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