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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9079 and 9080 are separated by 210 nucleotides
9080 and 9081 are separated by 1199 nucleotides
9081 and 9082 are separated by 125 nucleotides
9082 and 9083 are separated by 355 nucleotides
mRNA_711: 9079 - K00972 UAP1 UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase, at 1,700,499 to 1,702,038
9079
mRNA_712: 9080 - KOG4103 Mitochondrial F1F0-ATP synthase, subunit g/ATP20, at 1,702,249 to 1,703,188
9080
mRNA_713: 9081 - Hypothetical Protein, at 1,704,388 to 1,704,930
9081
mRNA_714: 9082 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 1,705,056 to 1,706,530
9082
mRNA_715: 9083 - KOG2893 Zn finger protein, at 1,706,886 to 1,708,484
9083
Group
Condition
mRNA
_711
mRNA
_712
mRNA
_713
mRNA
_714
mRNA
_715
9079
9080
9081
9082
9083
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.9
-0.9
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.9
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.8
-0.4
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+1.4
-1.4
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
-0.9
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.5
+0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
-0.2
+0.6
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.5
+0.3
+0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.5
+0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.6
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.3
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
-0.4
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
-0.2
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
+0.3
+0.8
auxotrophy
YNB Glucose
N.D.
N.D.
+0.3
-0.1
+0.8
growth on ypd
YPD
N.D.
N.D.
+0.4
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+1.0
+0.0
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