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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9083 and 9084 are separated by 1383 nucleotides
9084 and 9085 are separated by 447 nucleotides
9085 and 9086 are separated by 287 nucleotides
9086 and 9087 are separated by 428 nucleotides
mRNA_715: 9083 - KOG2893 Zn finger protein, at 1,706,886 to 1,708,484
9083
mRNA_716: 9084 - K01663 HIS7 glutamine amidotransferase / cyclase, at 1,709,868 to 1,711,961
9084
mRNA_717: 9085 - K00058 serA, PHGDH D-3-phosphoglycerate dehydrogenase, at 1,712,409 to 1,714,095
9085
mRNA_718: 9086 - KOG2776 Metallopeptidase, at 1,714,383 to 1,716,364
9086
mRNA_719: 9087 - HMMPfam-Protein of unknown function (DUF3074)-PF11274, at 1,716,793 to 1,718,081
9087
Group
Condition
mRNA
_715
mRNA
_716
mRNA
_717
mRNA
_718
mRNA
_719
9083
9084
9085
9086
9087
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
N.D.
-0.7
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
N.D.
-0.5
-0.8
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
-0.5
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
N.D.
-0.6
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
N.D.
-1.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
N.D.
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
N.D.
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
N.D.
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
N.D.
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.8
N.D.
N.D.
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
N.D.
+0.4
-0.2
auxotrophy
YNB Glucose
+0.8
N.D.
N.D.
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
N.D.
N.D.
+0.2
-0.3
auxotrophy
Dropout Complete
+0.9
N.D.
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
N.D.
N.D.
+0.3
-0.4
growth on oleic acid
YNB Glucose
+0.5
N.D.
N.D.
+0.0
+0.3
growth on ypd
YPD
+0.4
N.D.
N.D.
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
N.D.
N.D.
+0.8
-0.4
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