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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9085 and 9086 are separated by 287 nucleotides
9086 and 9087 are separated by 428 nucleotides
9087 and 9088 are separated by 779 nucleotides
9088 and 9089 are separated by 115 nucleotides
mRNA_717: 9085 - K00058 serA, PHGDH D-3-phosphoglycerate dehydrogenase, at 1,712,409 to 1,714,095
9085
mRNA_718: 9086 - KOG2776 Metallopeptidase, at 1,714,383 to 1,716,364
9086
mRNA_719: 9087 - HMMPfam-Protein of unknown function (DUF3074)-PF11274, at 1,716,793 to 1,718,081
9087
mRNA_720: 9088 - K00993 EPT1 ethanolaminephosphotransferase, at 1,718,861 to 1,720,406
9088
mRNA_721: 9089 - Hypothetical Protein, at 1,720,522 to 1,720,982
9089
Group
Condition
mRNA
_717
mRNA
_718
mRNA
_719
mRNA
_720
mRNA
_721
9085
9086
9087
9088
9089
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.8
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.5
-0.5
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.0
-0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.7
-0.4
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.4
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
-0.5
N.D.
auxotrophy
Dropout Complete
N.D.
-0.2
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
-0.2
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.8
-0.4
-0.9
N.D.
auxotrophy
YNB Glucose
N.D.
-0.3
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
+0.1
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.2
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
+0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.3
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.7
+0.3
N.D.
growth on ypd
YPD
N.D.
+0.5
-0.0
+0.5
N.D.
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