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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9086 and 9087 are separated by 428 nucleotides
9087 and 9088 are separated by 779 nucleotides
9088 and 9089 are separated by 115 nucleotides
9089 and 9090 are separated by 552 nucleotides
mRNA_718: 9086 - KOG2776 Metallopeptidase, at 1,714,383 to 1,716,364
9086
mRNA_719: 9087 - HMMPfam-Protein of unknown function (DUF3074)-PF11274, at 1,716,793 to 1,718,081
9087
mRNA_720: 9088 - K00993 EPT1 ethanolaminephosphotransferase, at 1,718,861 to 1,720,406
9088
mRNA_721: 9089 - Hypothetical Protein, at 1,720,522 to 1,720,982
9089
mRNA_722: 9090 - HMMPfam-Thiopurine S-methyltransferase (TPMT)-PF05724,ProSiteProfiles-Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile.-PS51585,SUPERFAMILY--SSF53335, at 1,721,535 to 1,722,519
9090
Group
Condition
mRNA
_718
mRNA
_719
mRNA
_720
mRNA
_721
mRNA
_722
9086
9087
9088
9089
9090
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.8
-0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.3
-0.5
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
-0.6
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.4
-0.9
N.D.
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.1
-0.3
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.5
-0.5
-0.5
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.2
-0.6
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
-0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.4
+0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.0
N.D.
+0.1
auxotrophy
Dropout Complete
-0.2
-0.2
-0.2
N.D.
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.7
+0.3
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose
-0.3
+0.0
-0.1
N.D.
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.1
+0.2
N.D.
+0.5
growth on ypd
YPD
+0.5
-0.0
+0.5
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
+0.4
N.D.
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
-0.3
N.D.
+0.9
growth on oleic acid
YNB Glucose
+0.0
+0.3
+0.0
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.2
N.D.
+0.8
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