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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9090 and 9091 are separated by 472 nucleotides
9091 and 9092 are separated by 257 nucleotides
9092 and 9093 are separated by 108 nucleotides
9093 and 9094 are separated by 841 nucleotides
mRNA_722: 9090 - HMMPfam-Thiopurine S-methyltransferase (TPMT)-PF05724,ProSiteProfiles-Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile.-PS51585,SUPERFAMILY--SSF53335, at 1,721,535 to 1,722,519
9090
mRNA_723: 9091 - K07127 uraH, pucM, hiuH 5-hydroxyisourate hydrolase, at 1,722,992 to 1,724,496
9091
mRNA_724: 9092 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 1,724,754 to 1,725,732
9092
mRNA_725: 9093 - KOG2702 Predicted panthothenate kinase/uridine kinase-related protein, at 1,725,841 to 1,726,998
9093
mRNA_726: 9094 - HMMPfam-Ferritin-like domain-PF13668, at 1,727,840 to 1,729,202
9094
Group
Condition
mRNA
_722
mRNA
_723
mRNA
_724
mRNA
_725
mRNA
_726
9090
9091
9092
9093
9094
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.4
-0.2
-1.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.5
-0.2
-0.5
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
-1.0
-0.1
-0.5
-0.4
growth on oleic acid
YNB Oleic Acid
+0.4
-0.5
-0.3
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.2
-0.3
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-1.0
+0.1
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
+0.4
-0.4
-0.4
-0.3
+0.1
growth on ypd
YPD
-0.4
-0.1
+0.2
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.4
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.2
-0.1
-0.1
-0.7
growth on oleic acid
YNB Glucose
+0.4
-0.3
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-0.4
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
-0.5
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.1
+0.1
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.3
-0.0
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.1
-0.3
-0.1
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.4
-0.1
-0.2
+0.6
auxotrophy
Dropout Complete
+0.4
-0.6
+0.0
+0.2
+0.0
auxotrophy
YNB Glucose
+0.7
-0.3
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.8
-0.1
-0.0
-0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.8
+0.2
-0.1
+0.3
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