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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9094 and 9095 are separated by 607 nucleotides
9095 and 9096 are separated by 282 nucleotides
9096 and 9097 are separated by 526 nucleotides
9097 and 9098 are separated by 457 nucleotides
mRNA_726: 9094 - HMMPfam-Ferritin-like domain-PF13668, at 1,727,840 to 1,729,202
9094
mRNA_727: 9095 - HMMPfam-Peroxidase, family 2-PF01328,ProSiteProfiles-Heme haloperoxidase family profile.-PS51405,SUPERFAMILY--SSF47571, at 1,729,810 to 1,731,316
9095
mRNA_728: 9096 - K18669 DYRK2_3_4 dual specificity tyrosine-phosphorylation-regulated kinase 2/3/4, at 1,731,599 to 1,733,273
9096
mRNA_729: 9097 - BLAST CMGC/DYRK/DYRK2 protein kinase [Microbotryum lychnidi..., at 1,733,800 to 1,738,518
9097
mRNA_730: 9098 - KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein), at 1,738,976 to 1,743,135
9098
Group
Condition
mRNA
_726
mRNA
_727
mRNA
_728
mRNA
_729
mRNA
_730
9094
9095
9096
9097
9098
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
-0.1
+0.0
-0.6
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.7
-0.2
-0.5
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.7
+0.0
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.0
-0.1
+0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
+0.2
-0.1
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.1
+0.1
+0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.0
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
+0.4
-0.6
growth on ypd
YPD
-0.2
-0.1
+0.1
+0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
-0.2
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.2
+0.3
+0.1
auxotrophy
Dropout Complete
+0.0
-0.2
+0.2
-0.1
+0.4
growth on oleic acid
YNB Glucose
-0.1
-0.3
+0.3
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
+0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
+0.3
+0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
-0.1
+0.5
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
+0.6
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
-0.3
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.1
+0.1
-0.1
+0.2
auxotrophy
YNB Glucose
-0.0
+0.3
+0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.3
-0.1
+0.6
-0.1
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