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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9096 and 9097 are separated by 526 nucleotides
9097 and 9098 are separated by 457 nucleotides
9098 and 9099 are separated by 314 nucleotides
9099 and 9100 are separated by 382 nucleotides
mRNA_728: 9096 - K18669 DYRK2_3_4 dual specificity tyrosine-phosphorylation-regulated kinase 2/3/4, at 1,731,599 to 1,733,273
9096
mRNA_729: 9097 - BLAST CMGC/DYRK/DYRK2 protein kinase [Microbotryum lychnidi..., at 1,733,800 to 1,738,518
9097
mRNA_730: 9098 - KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein), at 1,738,976 to 1,743,135
9098
mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,743,450 to 1,746,549
9099
mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1,746,932 to 1,748,724
9100
Group
Condition
mRNA
_728
mRNA
_729
mRNA
_730
mRNA
_731
mRNA
_732
9096
9097
9098
9099
9100
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
-1.0
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.6
-0.6
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.9
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
+0.0
+0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.1
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.4
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
+0.0
+0.0
-0.2
auxotrophy
Dropout Complete
+0.2
-0.1
+0.4
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
-0.6
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
+0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
-0.2
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.5
-0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.5
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
-0.0
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.6
-0.1
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+0.2
+0.3
+0.1
growth on ypd
YPD
+0.1
+0.4
-0.0
+0.1
+0.4
auxotrophy
YNB Glucose
+0.3
+0.1
+0.3
+0.3
-0.0
growth on oleic acid
YNB Glucose
+0.3
+0.2
+0.2
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.6
+0.3
+0.3
+0.3
+0.0
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