Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 9097 and 9098 are separated by 457 nucleotides9098 and 9099 are separated by 314 nucleotides9099 and 9100 are separated by 382 nucleotides9100 and 9101 are separated by 42 nucleotides mRNA_729: 9097 - BLAST CMGC/DYRK/DYRK2 protein kinase [Microbotryum lychnidi..., at 1,733,800 to 1,738,518 9097 mRNA_730: 9098 - KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein), at 1,738,976 to 1,743,135 9098 mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,743,450 to 1,746,549 9099 mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1,746,932 to 1,748,724 9100 mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1,748,767 to 1,750,473 9101
Group Condition mRNA_729 mRNA_730 mRNA_731 mRNA_732 mRNA_733
9097 9098 9099 9100 9101
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -1.0 -0.2 -0.2 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.9 -0.2 +0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -0.4 -0.2 +0.3 -0.6
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 -0.6 +0.1 -0.1 +0.4
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.0 +0.0 -0.3 +0.1
auxotrophy Dropout Complete -0.1 +0.4 -0.2 -0.3 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.0 +0.0 -0.2 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 -0.6 -0.1 +0.3 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.0 +0.2 -0.0 -0.1 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.1 +0.0 -0.1 +0.1
growth on ricinoleic acid YNB Glucose +0.3 -0.0 -0.2 -0.0 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.2 +0.0 -0.2 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.1 -0.1 +0.2 +0.0
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.2 +0.3 +0.1 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.5 -0.0 +0.1 -0.2 +0.1
auxotrophy YNB Glucose +0.1 +0.3 +0.3 -0.0 -0.1
growth on ypd YPD +0.4 -0.0 +0.1 +0.4 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.6 -0.1 +0.0 +0.2 +0.1
growth on oleic acid YNB Glucose +0.2 +0.2 +0.2 +0.2 +0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.5 -0.1 +0.1 +0.1 +0.2
growth on oleic acid YNB Oleic Acid +0.3 +0.3 +0.3 +0.0 +0.1
remove
mRNA_729
plot
remove
mRNA_730
plot
remove
mRNA_731
remove
mRNA_732
plot
remove
mRNA_733
plot