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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9097 and 9098 are separated by 457 nucleotides
9098 and 9099 are separated by 314 nucleotides
9099 and 9100 are separated by 382 nucleotides
9100 and 9101 are separated by 42 nucleotides
mRNA_729: 9097 - BLAST CMGC/DYRK/DYRK2 protein kinase [Microbotryum lychnidi..., at 1,733,800 to 1,738,518
9097
mRNA_730: 9098 - KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein), at 1,738,976 to 1,743,135
9098
mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,743,450 to 1,746,549
9099
mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1,746,932 to 1,748,724
9100
mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1,748,767 to 1,750,473
9101
Group
Condition
mRNA
_729
mRNA
_730
mRNA
_731
mRNA
_732
mRNA
_733
9097
9098
9099
9100
9101
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-1.0
-0.2
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.9
-0.2
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
-0.2
+0.3
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.6
+0.1
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.0
-0.3
+0.1
auxotrophy
Dropout Complete
-0.1
+0.4
-0.2
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
+0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.6
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.0
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
-0.2
-0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.2
+0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.1
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.3
+0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.0
+0.1
-0.2
+0.1
auxotrophy
YNB Glucose
+0.1
+0.3
+0.3
-0.0
-0.1
growth on ypd
YPD
+0.4
-0.0
+0.1
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.1
+0.0
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
+0.1
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.3
+0.3
+0.0
+0.1
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