Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9099 and 9100 are separated by 382 nucleotides9100 and 9101 are separated by 42 nucleotides9101 and 9102 are separated by 395 nucleotides9102 and 9103 are separated by 755 nucleotides mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,743,450 to 1,746,549 9099 mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1,746,932 to 1,748,724 9100 mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1,748,767 to 1,750,473 9101 mRNA_734: 9102 - K08149 SLC2A12, GLUT12 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12, at 1,750,869 to 1,753,209 9102 mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1,753,965 to 1,755,090 9103
Group Condition mRNA_731 mRNA_732 mRNA_733 mRNA_734 mRNA_735
9099 9100 9101 9102 9103
auxotrophy Dropout Complete -0.2 -0.3 -0.2 -0.4 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.1 -0.2 -0.4 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 -0.2 +0.1 -0.4 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.3 -0.1 -0.1 -0.4
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -0.1 +0.4 +0.1 -1.0
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.2 -0.1 +0.2 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 +0.2 +0.0 -0.3 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 +0.2 +0.1 -0.2 -0.5
growth on ricinoleic acid YNB Glucose -0.2 -0.0 -0.0 -0.2 +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.2 +0.1 +0.1 -0.3
auxotrophy YNB Glucose 75mM Methionine +0.3 +0.1 -0.0 -0.2 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.2 +0.2 -0.2 +0.3 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 +0.3 -0.6 +0.4 +0.2
growth on ypd YPD +0.1 +0.4 -0.2 -0.3 +0.0
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.1 +0.1 +0.0 +0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.1 +0.2 +0.0 -0.2
growth on oleic acid YNB Glucose +0.2 +0.2 +0.0 -0.4 +0.3
auxotrophy YNB Glucose +0.3 -0.0 -0.1 -0.4 +0.5
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.3 +0.1 +0.4 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 -0.2 +0.1 +0.0 +0.6
growth on oleic acid YNB Oleic Acid +0.3 +0.0 +0.1 +0.1 +0.1
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