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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9099 and 9100 are separated by 382 nucleotides
9100 and 9101 are separated by 42 nucleotides
9101 and 9102 are separated by 395 nucleotides
9102 and 9103 are separated by 755 nucleotides
mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,743,450 to 1,746,549
9099
mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1,746,932 to 1,748,724
9100
mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1,748,767 to 1,750,473
9101
mRNA_734: 9102 - K08149 SLC2A12, GLUT12 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12, at 1,750,869 to 1,753,209
9102
mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1,753,965 to 1,755,090
9103
Group
Condition
mRNA
_731
mRNA
_732
mRNA
_733
mRNA
_734
mRNA
_735
9099
9100
9101
9102
9103
auxotrophy
Dropout Complete
-0.2
-0.3
-0.2
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.2
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.2
+0.1
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
-0.1
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.4
+0.1
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.0
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
+0.1
-0.2
-0.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
+0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-0.0
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.2
+0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
-0.6
+0.4
+0.2
growth on ypd
YPD
+0.1
+0.4
-0.2
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
+0.0
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.0
-0.4
+0.3
auxotrophy
YNB Glucose
+0.3
-0.0
-0.1
-0.4
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
+0.1
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
+0.1
+0.0
+0.6
growth on oleic acid
YNB Oleic Acid
+0.3
+0.0
+0.1
+0.1
+0.1
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