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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9101 and 9102 are separated by 395 nucleotides
9102 and 9103 are separated by 755 nucleotides
9103 and 9104 are separated by 153 nucleotides
9104 and 9105 are separated by 309 nucleotides
mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1,748,767 to 1,750,473
9101
mRNA_734: 9102 - K08149 SLC2A12, GLUT12 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12, at 1,750,869 to 1,753,209
9102
mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1,753,965 to 1,755,090
9103
mRNA_736: 9104 - K00034 gdh glucose 1-dehydrogenase, at 1,755,244 to 1,756,596
9104
mRNA_737: 9105 - HMMPfam-EthD domain-PF07110,SUPERFAMILY--SSF54909,TIGRFAM-TIGR02118 conserved hypothetical protein-TIGR02118, at 1,756,906 to 1,757,418
9105
Group
Condition
mRNA
_733
mRNA
_734
mRNA
_735
mRNA
_736
mRNA
_737
9101
9102
9103
9104
9105
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
-1.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
-0.5
-0.0
N.D.
growth on ypd
YPD
-0.2
-0.3
+0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.4
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
-0.3
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
+0.2
+0.3
N.D.
auxotrophy
Dropout Complete
-0.2
-0.4
+0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.4
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.4
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
-0.2
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.4
+0.3
+0.6
N.D.
auxotrophy
YNB Glucose
-0.1
-0.4
+0.5
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
+0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.1
+0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.0
+0.6
+0.5
N.D.
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