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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9103 and 9104 are separated by 153 nucleotides
9104 and 9105 are separated by 309 nucleotides
9105 and 9106 are separated by 580 nucleotides
9106 and 9107 are separated by 1800 nucleotides
mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1,753,965 to 1,755,090
9103
mRNA_736: 9104 - K00034 gdh glucose 1-dehydrogenase, at 1,755,244 to 1,756,596
9104
mRNA_737: 9105 - HMMPfam-EthD domain-PF07110,SUPERFAMILY--SSF54909,TIGRFAM-TIGR02118 conserved hypothetical protein-TIGR02118, at 1,756,906 to 1,757,418
9105
mRNA_738: 9106 - K06606 iolI 2-keto-myo-inositol isomerase, at 1,757,999 to 1,760,705
9106
mRNA_739: 9107 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 1,762,506 to 1,766,867
9107
Group
Condition
mRNA
_735
mRNA
_736
mRNA
_737
mRNA
_738
mRNA
_739
9103
9104
9105
9106
9107
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.2
N.D.
-0.7
-1.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
N.D.
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
N.D.
-0.1
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
N.D.
-0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.5
N.D.
-0.2
-1.5
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
N.D.
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
N.D.
-0.3
-0.4
growth on ypd
YPD
+0.0
+0.0
N.D.
+0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
N.D.
+0.5
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.0
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.3
N.D.
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
+0.1
+0.2
auxotrophy
Dropout Complete
+0.2
+0.3
N.D.
+0.3
-0.5
growth on oleic acid
YNB Oleic Acid
+0.1
+0.7
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.3
N.D.
+0.4
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.6
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
+0.5
+0.4
N.D.
+0.1
+0.0
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