Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9103 and 9104 are separated by 153 nucleotides9104 and 9105 are separated by 309 nucleotides9105 and 9106 are separated by 580 nucleotides9106 and 9107 are separated by 1800 nucleotides mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1,753,965 to 1,755,090 9103 mRNA_736: 9104 - K00034 gdh glucose 1-dehydrogenase, at 1,755,244 to 1,756,596 9104 mRNA_737: 9105 - HMMPfam-EthD domain-PF07110,SUPERFAMILY--SSF54909,TIGRFAM-TIGR02118 conserved hypothetical protein-TIGR02118, at 1,756,906 to 1,757,418 9105 mRNA_738: 9106 - K06606 iolI 2-keto-myo-inositol isomerase, at 1,757,999 to 1,760,705 9106 mRNA_739: 9107 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 1,762,506 to 1,766,867 9107
Group Condition mRNA_735 mRNA_736 mRNA_737 mRNA_738 mRNA_739
9103 9104 9105 9106 9107
ypd buoyancy 40 hrs No Buoyancy Separation -1.0 -0.2 N.D. -0.7 -1.0
ypd buoyancy 40 hrs Low Buoyancy -0.3 -0.1 N.D. -0.3 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.2 N.D. -0.1 -0.9
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.1 N.D. -0.4 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.6 +0.5 N.D. -0.2 -1.5
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.1 N.D. -0.3 -0.0
growth on ricinoleic acid YNB Glucose +0.1 +0.3 N.D. -0.3 -0.4
growth on ypd YPD +0.0 +0.0 N.D. +0.0 -0.4
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 +0.1 N.D. -0.1 -0.4
auxotrophy YNB Glucose 75mM Methionine -0.3 +0.3 N.D. +0.5 -0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 -0.0 N.D. +0.3 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 +0.1 N.D. +0.2 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.1 N.D. -0.1 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.0 -0.1 N.D. +0.2 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 +0.3 N.D. +0.0 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.2 N.D. +0.1 +0.2
auxotrophy Dropout Complete +0.2 +0.3 N.D. +0.3 -0.5
growth on oleic acid YNB Oleic Acid +0.1 +0.7 N.D. -0.1 -0.4
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.3 N.D. +0.4 -0.2
growth on oleic acid YNB Glucose +0.3 +0.6 N.D. -0.1 -0.0
auxotrophy YNB Glucose +0.5 +0.4 N.D. +0.1 +0.0
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