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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9108 and 9109 are separated by 153 nucleotides
9109 and 9110 are separated by 183 nucleotides
9110 and 9111 are separated by 385 nucleotides
9111 and 9112 are separated by 500 nucleotides
mRNA_740: 9108 - K13103 TFIP11 tuftelin-interacting protein 11, at 1,767,098 to 1,770,950
9108
mRNA_741: 9109 - K12858 DDX23, PRP28 ATP-dependent RNA helicase DDX23/PRP28, at 1,771,104 to 1,774,231
9109
mRNA_742: 9110 - HMMPfam-SPT2 chromatin protein-PF08243,SMART-SPT2 chromatin protein-SM00784, at 1,774,415 to 1,775,869
9110
mRNA_743: 9111 - K08493 VTI1 vesicle transport through interaction with t-SNAREs 1, at 1,776,255 to 1,777,416
9111
mRNA_744: 9112 - KOG2533 Permease of the major facilitator superfamily, at 1,777,917 to 1,780,253
9112
Group
Condition
mRNA
_740
mRNA
_741
mRNA
_742
mRNA
_743
mRNA
_744
9108
9109
9110
9111
9112
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.4
-2.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.0
-1.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
-1.2
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
-0.2
-0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.0
-0.4
-0.6
auxotrophy
YNB Glucose
N.D.
N.D.
-0.0
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.6
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.5
-0.2
-0.6
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
+0.1
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
-0.5
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.1
+0.3
growth on ypd
YPD
N.D.
N.D.
+0.0
+0.8
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
+1.5
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+1.5
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
+1.2
+0.0
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